Loop Free-Energy Decomposition

Structural element		Information
External loop	0.0	0 ss bases & 1 closing helices.
Stack	-3.3	External closing pair is G 1-C 52
Stack	-2.4	External closing pair is G 2-C 51
Stack	-2.2	External closing pair is A 3-U 50
Stack	-2.1	External closing pair is C 4-G 49
Helix	-10.0	5 base pairs.
Multi-loop	2.9	External closing pair is A 5-U 48 11 ss bases & 3 closing helices.
Stack	-2.1	External closing pair is U 28-A 46
Stack	-3.3	External closing pair is G 29-C 45
Stack	-3.4	External closing pair is G 30-C 44
Stack	-3.3	External closing pair is C 31-G 43
Stack	-2.1	External closing pair is C 32-G 42
Helix	-14.2	6 base pairs.
Hairpin loop	5.1	Closing pair is U 33-A 41
Stack	-2.1	External closing pair is C 9-G 20
Stack	-2.1	External closing pair is A 10-U 19
Stack	-3.3	External closing pair is G 11-C 18
Helix	-7.5	4 base pairs.
Hairpin loop	4.3	Closing pair is G 12-C 17